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Intron Name: Anas_platyrhynchos_platyrhynchos_3_55017454_55023551_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

55017454 - 55023551

Intron Length:

6098

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTATGTATT

5'SS Class:

strong_major

3'SS Sequence:

GTTGTATTAACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTACAA

U12 Branch Point Sequence:

GTTGTATTAACA

Flanking Amino Acid:

GPIGMEGESFDLEREEAGSS

Intron Amino Acid Position:

175

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.8

0.9

85.3

31.1

Major BPS

73.5

0.59

81.3

29.9

Major PPT

72.1

0.5

66.5

43.2

Minor 5ss

47.9

-0.2

2.5

65.4

40.1

Minor BPS

61.9

0.37

1.7

72.91

38.8

Associated Gene:

Gene:

VTA1

Ensembl Gene ID:

ENSAPLG00000002391

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002422

55009948 - 55048108

38161