About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_55030878_55034080_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55030878 - 55034080
Intron Length:
3203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
CTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTTTTCAACT
Flanking Amino Acid:
LSKLMDQLEAMKKQFGDNEA
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1.1
80.4
34
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
96.3
1.04
0.5
95.7
14.9
Minor 5ss
42.2
-0.9
2.9
61.3
43
Minor BPS
75.5
0.88
1.4
91.64
31.3

Associated Gene:

Gene:
VTA1
Ensembl Gene ID:
ENSAPLG00000002391
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002422
55009948 - 55048108
38161