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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_55053275_55053689_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
55053275 - 55053689
Intron Length:
415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTCTC
5'SS Class:
strong_major
3'SS Sequence:
TGCTACAGATTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTAAATGACC
Flanking Amino Acid:
YNQFSPKIPQVFWALQLVIV
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
78.1
36.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
54.3
0.1
1
52.8
41.2
Minor 5ss
38.8
-1.3
3
53.4
43.7
Minor BPS
49.8
-0
2.1
73.62
36.6

Associated Gene:

Gene:
GJE1
Ensembl Gene ID:
ENSAPLG00000019936
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039993
55052879 - 55056606
3728