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Intron Name: Anas_platyrhynchos_platyrhynchos_3_55053846_55056561_R

Intron Information:

Intron Rank:

Intron Class:

minor-like

Intron Phase:

Intron Coordinates:

55053846 - 55056561

Intron Length:

2716

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTT|GTATTCATT

5'SS Class:

weak_minor

3'SS Sequence:

GGTAATTGGCTAG|T

3'SS Class:

degenerate_minor

U2 Branch Point Sequence:

CTGTGAT

U12 Branch Point Sequence:

TGATGTGCAACT

Flanking Amino Acid:

LKYAFSVTNFFHTLCFGSVR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.12

1.1

41.9

Major BPS

68.9

0.47

1.2

60.7

45.9

Major PPT

50.4

0.01

1.2

43.1

47.2

Minor 5ss

64.2

0.48

2.4

80.8

32.9

Minor BPS

43.3

-0.4

2.4

65.56

44.9

Associated Gene:

Gene:

GJE1

Ensembl Gene ID:

ENSAPLG00000019936

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039993

55052879 - 55056606

3728