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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_55077033_55079324_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55077033 - 55079324
Intron Length:
2292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TTCATCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTCTCTTCATCT
Flanking Amino Acid:
GEYSEHSKRQMETRKRLAKI
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.9
81.8
38.5
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
82.5
0.73
0.7
81.1
30.8
Minor 5ss
41.1
-1
2.9
57.9
46.4
Minor BPS
60
0.39
1.8
79.81
42.6

Associated Gene:

Gene:
NMBR
Ensembl Gene ID:
ENSAPLG00000002556
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002567
55060888 - 55081182
20295