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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_55185621_55188646_R

Intron Information:

Intron Rank:
150929
Intron Class:
major
Intron Phase:
Intron Coordinates:
55185621 - 55188646
Intron Length:
3026

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCACC
5'SS Class:
strong_major
3'SS Sequence:
AACTTTATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
CTTCCATTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.9
78.8
35.5
Major BPS
75.1
0.62
1
65.6
41
Major PPT
77.8
0.63
0.9
74.5
39.2
Minor 5ss
40.6
-1
2.8
52.8
44.1
Minor BPS
72.2
0.77
1.6
86.99
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028684
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022904
55183831 - 55188974
5144