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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_55219617_55220572_R

Intron Information:

Intron Rank:
155508
Intron Class:
major
Intron Phase:
Intron Coordinates:
55219617 - 55220572
Intron Length:
956

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTGA
5'SS Class:
major
3'SS Sequence:
TATTTTTGAGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.45
1.1
59.6
41.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
64.9
0.33
1.2
69
40.7
Minor 5ss
35.1
-1.7
3.4
47.8
47.7
Minor BPS
64.7
0.54
1.5
79.8
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031165
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036430
55219434 - 55222646
3213
ENSAPLT00000026054
55219554 - 55238537
18984