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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_55508248_55508744_R

Intron Information:

Intron Rank:
155041
Intron Class:
major
Intron Phase:
Intron Coordinates:
55508248 - 55508744
Intron Length:
497

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTGA
5'SS Class:
strong_major
3'SS Sequence:
TATGGTGTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTCCTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
77.4
33.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
64.1
0.32
1
57.3
43
Minor 5ss
38.9
-1.2
2.9
49.9
46.3
Minor BPS
66.3
0.49
1.6
75.98
33.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030906
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048370
55487794 - 55509594
21801