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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_55554872_55574100_R

Intron Information:

Intron Rank:
135776
Intron Class:
major
Intron Phase:
Intron Coordinates:
55554872 - 55574100
Intron Length:
19229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TTTATCTTCTGAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
64.1
0.32
1.7
77.1
37
Minor 5ss
39.5
-1.2
3
50.5
40
Minor BPS
68.4
0.66
1.7
88.82
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020436
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034222
55554625 - 55574349
19725