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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_55565479_55574100_R

Intron Information:

Intron Rank:
135774
Intron Class:
major
Intron Phase:
Intron Coordinates:
55565479 - 55574100
Intron Length:
8622

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
GTCTACTATACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTTATTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
72.2
0.5
1
65.3
40
Minor 5ss
39.5
-1.2
3
50.5
40
Minor BPS
54.8
0.23
1.6
71.35
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020436
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017286
55564957 - 55575901
10945