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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_55574178_55575479_R

Intron Information:

Intron Rank:
135775
Intron Class:
major
Intron Phase:
Intron Coordinates:
55574178 - 55575479
Intron Length:
1302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCAAT
U12 Branch Point Sequence:
TTTCCAATAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
83.5
27.8
Major BPS
71.8
0.54
1.2
79
32.5
Major PPT
89.6
0.89
0.6
84.8
30
Minor 5ss
38.7
-1.3
3.4
53.7
43.8
Minor BPS
61.2
0.33
1.9
78.92
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020436
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017286
55564957 - 55575901
10945