About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_55618894_55619427_F

Intron Information:

Intron Rank:
142665
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
55618894 - 55619427
Intron Length:
534

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGTCACT
5'SS Class:
weak_major
3'SS Sequence:
AATTCATTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
ATCTTTCCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.7
0.21
1.3
60.3
44.1
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
77
0.61
0.9
67
43.1
Minor 5ss
37.1
-1.5
3
50.8
45.3
Minor BPS
47.7
-0.1
1.8
66.41
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026894
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046384
55609236 - 55619650
10415