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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_55713959_55823132_R

Intron Information:

Intron Rank:
149095
Intron Class:
major
Intron Phase:
Intron Coordinates:
55713959 - 55823132
Intron Length:
109174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76.2
39.9
Major BPS
100
1.24
0.5
100
0
Major PPT
89.3
0.88
0.7
84.5
30
Minor 5ss
34.9
-1.7
3.5
48.2
47.9
Minor BPS
67.5
0.63
1.7
86.64
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027712
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048234
55655960 - 55823910
167951
ENSAPLT00000033063
55653213 - 55823910
170698