Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_55768279_55773622_F

Intron Information:

Intron Rank:

125852

Intron Class:

major

Intron Phase:

Intron Coordinates:

55768279 - 55773622

Intron Length:

5344

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTGAA

5'SS Class:

strong_major

3'SS Sequence:

TTCTATCTCTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTCTAT

U12 Branch Point Sequence:

TTTTTTCTATCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.1

0.85

0.9

80.4

26.8

Major BPS

73.8

0.59

1.3

72.8

Major PPT

82.6

0.73

0.8

80.7

30.9

Minor 5ss

33.7

-1.9

3.2

40.3

40.1

Minor BPS

58.9

0.36

1.9

83.9

37.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017803

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019884

55767802 - 55774552

6751