Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_55828084_55841905_F

Intron Information:

Intron Rank:

147114

Intron Class:

major

Intron Phase:

Intron Coordinates:

55828084 - 55841905

Intron Length:

13822

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAT|GTGAGTAAC

5'SS Class:

strong_major

3'SS Sequence:

CACTATTTTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTCCAT

U12 Branch Point Sequence:

CAGTGCTTAATG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

79.5

28.3

Major BPS

77.3

0.68

1.2

86.7

32.3

Major PPT

73.7

0.53

0.9

65.4

40.5

Minor 5ss

-1.9

2.8

41.3

38.3

Minor BPS

54.4

-0

1.9

55.89

45.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029235

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044868

55827859 - 55917145

89287