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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_55895775_55899380_R

Intron Information:

Intron Rank:
134272
Intron Class:
major
Intron Phase:
Intron Coordinates:
55895775 - 55899380
Intron Length:
3606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.2
0.75
0.7
77.4
36.6
Minor 5ss
32.5
-2
3.3
47.4
48
Minor BPS
65.4
0.56
1.5
80.16
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019518
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024429
55894783 - 55899949
5167