Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_55936898_55938565_F

Intron Information:

Intron Rank:

124016

Intron Class:

major

Intron Phase:

Intron Coordinates:

55936898 - 55938565

Intron Length:

1668

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGAATG

5'SS Class:

strong_major

3'SS Sequence:

GTTTTTTATTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

CTTTCTTCAACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

0.9

73.3

37.3

Major BPS

96.5

1.15

0.6

34.2

Major PPT

86.3

0.82

0.8

85.4

34.3

Minor 5ss

31.8

-2.1

37.5

41.1

Minor BPS

74.3

0.84

1.5

87.98

37.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016851

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018711

55936056 - 55943836

7781