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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_55936898_55943240_F

Intron Information:

Intron Rank:
124022
Intron Class:
major
Intron Phase:
Intron Coordinates:
55936898 - 55943240
Intron Length:
6343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TACTATTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTACTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
0.9
73.3
37.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
83.4
0.75
0.8
80.7
36.2
Minor 5ss
31.8
-2.1
3
37.5
41.1
Minor BPS
48.7
-0
2.1
77.41
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016851
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046146
55936056 - 55943836
7781