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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_56111478_56113162_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56111478 - 56113162
Intron Length:
1685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGCA
5'SS Class:
strong_major
3'SS Sequence:
TATTTTCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
ATTTTCTTACAG
Flanking Amino Acid:
IIDQYELREEHLDKIFKHRE
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71.1
34.7
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
89.8
0.9
0.7
84.5
30.1
Minor 5ss
31.2
-2.2
3.2
38.8
46.5
Minor BPS
58.7
0.13
1.8
66.56
41.1

Associated Gene:

Gene:
TXLNB
Ensembl Gene ID:
ENSAPLG00000003963
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004082
56097164 - 56125560
28397