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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_56111478_56118460_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
56111478 - 56118460
Intron Length:
6983

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGCA
5'SS Class:
strong_major
3'SS Sequence:
GCCCAAAACACAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
TTGCCCAAAACA
Flanking Amino Acid:
IIDQYELREELLNQAAEWKL
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71.1
34.7
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
51.8
0.04
1
43
35.1
Minor 5ss
31.2
-2.2
3.2
38.8
46.5
Minor BPS
52.9
0.09
2
69.91
42.1

Associated Gene:

Gene:
TXLNB
Ensembl Gene ID:
ENSAPLG00000003963
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047089
56097164 - 56125560
28397