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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_56113283_56118460_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
56113283 - 56118460
Intron Length:
5178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAACTATC
5'SS Class:
major
3'SS Sequence:
GCCCAAAACACAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
TTGCCCAAAACA
Flanking Amino Acid:
EERHQKEKEYLLNQAAEWKL
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.2
78.2
36.4
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
51.8
0.04
1
43
35.1
Minor 5ss
48.3
-0.2
2.6
67.9
35.8
Minor BPS
52.9
0.09
2
69.91
42.1

Associated Gene:

Gene:
TXLNB
Ensembl Gene ID:
ENSAPLG00000003963
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004082
56097164 - 56125560
28397