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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_5611748_5611934_F

Intron Information:

Intron Rank:
145269
Intron Class:
major
Intron Phase:
Intron Coordinates:
5611748 - 5611934
Intron Length:
187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGCAGT
5'SS Class:
major
3'SS Sequence:
CTCTCTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAC
U12 Branch Point Sequence:
CTCTCTTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.5
0.41
1.3
65.3
46
Major BPS
67.8
0.44
1
75
30.1
Major PPT
83.4
0.75
0.7
78.7
27
Minor 5ss
42.6
-0.8
2.7
58.3
45.9
Minor BPS
62.1
0.37
1.8
70.26
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028317
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034273
5611401 - 5612791
1391