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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_56179627_56188102_R

Intron Information:

Intron Rank:
139393
Intron Class:
major
Intron Phase:
Intron Coordinates:
56179627 - 56188102
Intron Length:
8476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTCA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTAAA
U12 Branch Point Sequence:
TTCCTCTGGAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
73.7
33.1
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
89.1
0.88
0.6
84.3
23.6
Minor 5ss
38.7
-1.3
2.9
47.9
47.8
Minor BPS
48.6
-0
1.8
68.72
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022465
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033901
56178940 - 56188761
9822