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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_56179627_56192867_R

Intron Information:

Intron Rank:
139394
Intron Class:
major
Intron Phase:
Intron Coordinates:
56179627 - 56192867
Intron Length:
13241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTAAA
U12 Branch Point Sequence:
TTCCTCTGGAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
86.5
28.5
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
89.1
0.88
0.6
84.3
23.6
Minor 5ss
40.8
-1
2.8
57.5
39.6
Minor BPS
48.6
-0
1.8
68.72
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022465
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042668
56178940 - 56193603
14664