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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_56195837_56196989_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56195837 - 56196989
Intron Length:
1153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTGATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTGTCTTTGATT
Flanking Amino Acid:
VEEIRRLGTRNADGQVSVKF
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
71.2
0.48
1
69.9
40.6
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
76.7
0.92
1.1
86.34
34.1

Associated Gene:

Gene:
ABRACL
Ensembl Gene ID:
ENSAPLG00000003918
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004006
56195652 - 56197050
1399