Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_56216281_56232353_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

56216281 - 56232353

Intron Length:

16073

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGACCTG

5'SS Class:

major

3'SS Sequence:

TGTTTTGTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTTAA

U12 Branch Point Sequence:

GTTGCCTTATAG

Flanking Amino Acid:

AQLPNDVVMQIMELCGATRL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.7

0.44

1.1

56.9

47.7

Major BPS

78.5

0.71

0.9

69.7

37.1

Major PPT

85.6

0.8

0.9

80.6

Minor 5ss

39.4

-1.2

3.5

55.3

48.9

Minor BPS

52.8

-0

1.9

61.46

45.9

Associated Gene:

Gene:

REPS1

Ensembl Gene ID:

ENSAPLG00000003179

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039314

56215949 - 56280206

64258

ENSAPLT00000023686

56215949 - 56280206

64258

ENSAPLT00000003333

56215949 - 56280206

64258