About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_56244107_56249996_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56244107 - 56249996
Intron Length:
5890

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAAATG
5'SS Class:
major
3'SS Sequence:
CTTCTACTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
GTGTTCTGAAAT
Flanking Amino Acid:
FWAPFSEAQPGSSTSSDPIW
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
70.5
39.5
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
84.4
0.77
0.8
81.4
29.3
Minor 5ss
42.5
-0.8
3
57.1
47.2
Minor BPS
60.4
0.4
1.6
74.82
41.4

Associated Gene:

Gene:
REPS1
Ensembl Gene ID:
ENSAPLG00000003179
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039314
56215949 - 56280206
64258
ENSAPLT00000023686
56215949 - 56280206
64258
ENSAPLT00000003333
56215949 - 56280206
64258