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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_56250125_56250592_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56250125 - 56250592
Intron Length:
468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGACAC
5'SS Class:
major
3'SS Sequence:
TATTTCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
AAATATTTCATT
Flanking Amino Acid:
LLAMHPASVQDQTTVRTVAS
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
0.9
63.8
36.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
85.1
0.79
0.8
82.5
33.5
Minor 5ss
32.9
-2
3
41.2
45.5
Minor BPS
48.1
-0
1.9
65.28
39.4

Associated Gene:

Gene:
REPS1
Ensembl Gene ID:
ENSAPLG00000003179
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039314
56215949 - 56280206
64258
ENSAPLT00000023686
56215949 - 56280206
64258
ENSAPLT00000003333
56215949 - 56280206
64258