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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_56251130_56252011_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
56251130 - 56252011
Intron Length:
882

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTTATACTAAGT
Flanking Amino Acid:
KLPILELSHIWELSDFDKDG
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
83.2
28.5
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
89
0.88
0.6
88.7
20.6
Minor 5ss
36.4
-1.5
3.3
45.9
43.7
Minor BPS
47.2
-0.1
2.2
74.39
42

Associated Gene:

Gene:
REPS1
Ensembl Gene ID:
ENSAPLG00000003179
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039314
56215949 - 56280206
64258
ENSAPLT00000023686
56215949 - 56280206
64258
ENSAPLT00000003333
56215949 - 56280206
64258