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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_56274722_56276007_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56274722 - 56276007
Intron Length:
1286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATGTCC
5'SS Class:
major
3'SS Sequence:
TCCTTTATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAC
U12 Branch Point Sequence:
TGTTCCTTTATT
Flanking Amino Acid:
AVPPRPQPSQGAGPHVHRPV
Intron Amino Acid Position:
597

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
65.4
34.8
Major BPS
71.4
0.53
1.2
63.4
44
Major PPT
85.4
0.8
0.8
80.7
29.7
Minor 5ss
32.6
-2
3.2
42.3
44.6
Minor BPS
75.7
0.89
1.5
89.03
35.4

Associated Gene:

Gene:
REPS1
Ensembl Gene ID:
ENSAPLG00000003179
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003333
56215949 - 56280206
64258
ENSAPLT00000039314
56215949 - 56280206
64258
ENSAPLT00000023686
56215949 - 56280206
64258