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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_56276194_56277645_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56276194 - 56277645
Intron Length:
1452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTCTGAGAATT
Flanking Amino Acid:
EIETHSEVLQGKGTTPLAPP
Intron Amino Acid Position:
659

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
88.3
0.86
0.6
86
21
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
44.5
-0.3
2.3
70.92
40.1

Associated Gene:

Gene:
REPS1
Ensembl Gene ID:
ENSAPLG00000003179
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039314
56215949 - 56280206
64258