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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_56277795_56278418_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
56277795 - 56278418
Intron Length:
624

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAACCCAA
5'SS Class:
major
3'SS Sequence:
AATATATTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
AATGACTTAAAA
Flanking Amino Acid:
AVLASQPSIPRSVGKDKKAI
Intron Amino Acid Position:
740

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1.2
65
42.7
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
75.5
0.57
1
70.9
43.5
Minor 5ss
42.7
-0.8
3
56.1
48
Minor BPS
56
0.18
1.7
65.72
39.9

Associated Gene:

Gene:
REPS1
Ensembl Gene ID:
ENSAPLG00000003179
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003333
56215949 - 56280206
64258
ENSAPLT00000039314
56215949 - 56280206
64258
ENSAPLT00000023686
56215949 - 56280206
64258