Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_56278525_56279606_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

56278525 - 56279606

Intron Length:

1082

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATATAG

5'SS Class:

strong_major

3'SS Sequence:

ATTTCTTTTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAAATAT

U12 Branch Point Sequence:

TCTCTGTGGACA

Flanking Amino Acid:

LNSELQQQLKDVLEERISLE

Intron Amino Acid Position:

776

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

70.5

36.1

Major BPS

50.9

0.02

1.1

47.4

35.7

Major PPT

85.6

0.8

0.7

81.6

29.6

Minor 5ss

37.4

-1.4

47.2

48.2

Minor BPS

45.4

-0.3

2.2

59.87

40.1

Associated Gene:

Gene:

REPS1

Ensembl Gene ID:

ENSAPLG00000003179

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039314

56215949 - 56280206

64258

ENSAPLT00000023686

56215949 - 56280206

64258

ENSAPLT00000003333

56215949 - 56280206

64258