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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_56285396_56289932_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56285396 - 56289932
Intron Length:
4537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCTGTCTTCACA
Flanking Amino Acid:
DSNLDRLLSDGSSPHILPRV
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.7
29.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
81.2
0.7
0.8
75.6
32.9
Minor 5ss
38.4
-1.3
2.7
48.5
40.3
Minor BPS
58.3
0.26
1.9
70.02
42.9

Associated Gene:

Gene:
CCDC28A
Ensembl Gene ID:
ENSAPLG00000027699
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017371
56285321 - 56291576
6256