Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_56290088_56291052_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

56290088 - 56291052

Intron Length:

965

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAGATGTG

5'SS Class:

major

3'SS Sequence:

TTGTCGTTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTAAA

U12 Branch Point Sequence:

TTTCTCTAAAGC

Flanking Amino Acid:

DFHSGKLQAFGNECSIEQME

Intron Amino Acid Position:

108

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.8

0.44

1.1

62.2

42.6

Major BPS

0.57

73.6

28.6

Major PPT

79.2

0.66

0.9

77.4

36.9

Minor 5ss

34.4

-1.8

3.6

45.5

Minor BPS

54.9

0.13

71.01

40.5

Associated Gene:

Gene:

CCDC28A

Ensembl Gene ID:

ENSAPLG00000027699

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040217

56287686 - 56291576

3891

ENSAPLT00000017371

56285321 - 56291576

6256