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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_56428880_56430660_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56428880 - 56430660
Intron Length:
1781

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
TCTCTCTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAG
U12 Branch Point Sequence:
TAGCATTTAGTT
Flanking Amino Acid:
SLVKLFKKRKTVSNLDEESR
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
69.9
41.1
Major BPS
52.4
0.06
1.5
53
42.8
Major PPT
85.8
0.81
0.7
80.7
24.4
Minor 5ss
37.4
-1.4
2.7
42.4
38.3
Minor BPS
48.1
-0
1.7
63.55
40.9

Associated Gene:

Gene:
NHSL1
Ensembl Gene ID:
ENSAPLG00000003036
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003083
56428819 - 56476916
48098