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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_56430814_56445578_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56430814 - 56445578
Intron Length:
14765

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTGAT
U12 Branch Point Sequence:
GATACATTGATT
Flanking Amino Acid:
AKLNLKSVLRECDKLRRDGY
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
75.9
34.8
Major BPS
76.2
0.65
1
67
39.8
Major PPT
79
0.65
1
76.5
37.5
Minor 5ss
38.3
-1.3
3.1
50.9
45.7
Minor BPS
55.4
0.25
1.7
71.08
39.4

Associated Gene:

Gene:
NHSL1
Ensembl Gene ID:
ENSAPLG00000003036
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003083
56428819 - 56476916
48098
ENSAPLT00000034586
56382035 - 56476916
94882
ENSAPLT00000022543
56382035 - 56476916
94882