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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_56445707_56454436_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56445707 - 56454436
Intron Length:
8730

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGATG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAC
U12 Branch Point Sequence:
AAAACTTACACT
Flanking Amino Acid:
QDDYEEIEQKCSVSSPEEEK
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
75.3
40.4
Major BPS
64.9
0.37
0.9
55.4
32.3
Major PPT
89.1
0.88
0.7
84.2
30.7
Minor 5ss
35.9
-1.6
3.2
48.4
47.4
Minor BPS
45
-0.3
2
61
42.6

Associated Gene:

Gene:
NHSL1
Ensembl Gene ID:
ENSAPLG00000003036
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003083
56428819 - 56476916
48098
ENSAPLT00000034586
56382035 - 56476916
94882
ENSAPLT00000022543
56382035 - 56476916
94882