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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_56454630_56468670_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56454630 - 56468670
Intron Length:
14041

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGCTTT
5'SS Class:
major
3'SS Sequence:
ATTTTGACTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTGACT
Flanking Amino Acid:
QTDVVPINVTAVGTGQSDFR
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.1
71.5
41.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
77.1
0.61
0.9
67.6
43
Minor 5ss
48.5
-0.1
3.2
69.4
43.7
Minor BPS
73
0.81
1.2
87.15
31.9

Associated Gene:

Gene:
NHSL1
Ensembl Gene ID:
ENSAPLG00000003036
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022543
56382035 - 56476916
94882