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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_56472085_56472635_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56472085 - 56472635
Intron Length:
551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TATTTCTGCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGTTCATTATTT
Flanking Amino Acid:
DGHLSQENESAEVFESDTAN
Intron Amino Acid Position:
1361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
70.2
35.9
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
73
0.52
0.9
69.2
36.7
Minor 5ss
26.7
-2.7
3
27.9
37.8
Minor BPS
62.4
0.47
1.9
82.13
39.2

Associated Gene:

Gene:
NHSL1
Ensembl Gene ID:
ENSAPLG00000003036
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034586
56382035 - 56476916
94882
ENSAPLT00000022543
56382035 - 56476916
94882
ENSAPLT00000003083
56428819 - 56476916
48098