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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_56472766_56476192_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
56472766 - 56476192
Intron Length:
3427

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTAG
5'SS Class:
major
3'SS Sequence:
TTTCCAAACTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
GTTTTCCAAACT
Flanking Amino Acid:
TTEDLFAAIHRSKRKVLGRK
Intron Amino Acid Position:
1404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.1
59.6
41.8
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
70.2
0.46
0.9
67.7
36.9
Minor 5ss
35.1
-1.7
3.4
46.5
48.8
Minor BPS
57.4
0.31
2
81.08
40.4

Associated Gene:

Gene:
NHSL1
Ensembl Gene ID:
ENSAPLG00000003036
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034586
56382035 - 56476916
94882
ENSAPLT00000022543
56382035 - 56476916
94882
ENSAPLT00000003083
56428819 - 56476916
48098