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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_56518651_56519413_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56518651 - 56519413
Intron Length:
763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGACAC
5'SS Class:
major
3'SS Sequence:
ACTTTGCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TCTTTTGTATCC
Flanking Amino Acid:
SVRDAEAQIQAWTNMVLTVL
Intron Amino Acid Position:
2113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
66
40.1
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
74.8
0.56
0.9
65.7
40.4
Minor 5ss
30.9
-2.2
3.3
41.2
45.5
Minor BPS
48
-0.1
2.2
64.74
41.8

Associated Gene:

Gene:
ARFGEF3
Ensembl Gene ID:
ENSAPLG00000002724
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045378
56518459 - 56599650
81192
ENSAPLT00000028524
56518459 - 56600574
82116
ENSAPLT00000028117
56518459 - 56600574
82116
ENSAPLT00000002771
56518459 - 56600574
82116
ENSAPLT00000045590
56509069 - 56562071
53003