Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_56524504_56525951_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

56524504 - 56525951

Intron Length:

1448

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGAGACT

5'SS Class:

major

3'SS Sequence:

TGTTGTTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AACTGAT

U12 Branch Point Sequence:

TTTTCTATCACT

Flanking Amino Acid:

YWRIRAMAQQVFMLETQCSP

Intron Amino Acid Position:

1661

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.4

0.53

1.1

69.4

41.1

Major BPS

74.7

0.61

0.9

63.4

35.6

Major PPT

85.2

0.79

0.9

76.9

42.1

Minor 5ss

32.9

-2

3.5

Minor BPS

63.6

0.51

88.67

36.3

Associated Gene:

Gene:

ARFGEF3

Ensembl Gene ID:

ENSAPLG00000002724

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045378

56518459 - 56599650

81192

ENSAPLT00000028524

56518459 - 56600574

82116

ENSAPLT00000028117

56518459 - 56600574

82116

ENSAPLT00000002771

56518459 - 56600574

82116

ENSAPLT00000045590

56509069 - 56562071

53003