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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_56526084_56526723_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56526084 - 56526723
Intron Length:
640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACTGC
5'SS Class:
major
3'SS Sequence:
TGTCTCTCTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
TGTCTCTCTATA
Flanking Amino Acid:
AFSATLEPVKNLLGYFHSGS
Intron Amino Acid Position:
1617

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
66.5
40.4
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
78.8
0.65
0.8
73.3
31.8
Minor 5ss
43.5
-0.7
3
59.3
45.5
Minor BPS
47.8
-0.1
1.8
61.4
38.2

Associated Gene:

Gene:
ARFGEF3
Ensembl Gene ID:
ENSAPLG00000002724
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028117
56518459 - 56600574
82116
ENSAPLT00000002771
56518459 - 56600574
82116
ENSAPLT00000045590
56509069 - 56562071
53003
ENSAPLT00000045378
56518459 - 56599650
81192
ENSAPLT00000028524
56518459 - 56600574
82116