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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_56537753_56539105_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56537753 - 56539105
Intron Length:
1353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTGC
5'SS Class:
strong_major
3'SS Sequence:
TACTTCCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCAAT
U12 Branch Point Sequence:
TTTGCTTTTACT
Flanking Amino Acid:
DTVDYSLAMPGEVKSTQDRR
Intron Amino Acid Position:
1163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
75.6
35.3
Major BPS
71.8
0.54
1.2
79
32.5
Major PPT
79
0.65
0.8
73.9
30.8
Minor 5ss
39.9
-1.1
2.9
53
44.2
Minor BPS
69.5
0.7
1.7
87.77
37.8

Associated Gene:

Gene:
ARFGEF3
Ensembl Gene ID:
ENSAPLG00000002724
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045378
56518459 - 56599650
81192
ENSAPLT00000028524
56518459 - 56600574
82116
ENSAPLT00000028117
56518459 - 56600574
82116
ENSAPLT00000002771
56518459 - 56600574
82116
ENSAPLT00000045590
56509069 - 56562071
53003