About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_56541678_56542889_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56541678 - 56542889
Intron Length:
1212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAATG
5'SS Class:
major
3'SS Sequence:
TTTCATGCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCTTTTTATTT
Flanking Amino Acid:
IQEPSDAIAQVKQKVEQKLE
Intron Amino Acid Position:
963

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1.1
75.5
40.6
Major BPS
100
1.24
0.5
100
0
Major PPT
79.5
0.66
0.9
73.5
36.7
Minor 5ss
42.6
-0.8
3
57.6
46.6
Minor BPS
63.6
0.51
1.5
78.46
39

Associated Gene:

Gene:
ARFGEF3
Ensembl Gene ID:
ENSAPLG00000002724
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045378
56518459 - 56599650
81192
ENSAPLT00000028524
56518459 - 56600574
82116
ENSAPLT00000028117
56518459 - 56600574
82116
ENSAPLT00000002771
56518459 - 56600574
82116
ENSAPLT00000045590
56509069 - 56562071
53003