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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_56562048_56564729_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56562048 - 56564729
Intron Length:
2682

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCTTGC
5'SS Class:
major
3'SS Sequence:
CTTTCCTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
CTTTCCTCAACA
Flanking Amino Acid:
GASSSMAFQKTIENNDTLQK
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.2
64.3
43.1
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
78.1
0.63
0.8
73.8
29.8
Minor 5ss
45
-0.5
2.9
62.1
42.5
Minor BPS
76.9
0.84
1.5
83.78
36.8

Associated Gene:

Gene:
ARFGEF3
Ensembl Gene ID:
ENSAPLG00000002724
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028117
56518459 - 56600574
82116