Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_56563820_56567397_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

56563820 - 56567397

Intron Length:

3578

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGTGCC

5'SS Class:

strong_major

3'SS Sequence:

GTTTCCTCATCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCATAT

U12 Branch Point Sequence:

GTTTCCTCATCA

Flanking Amino Acid:

NGSSVLKIAEVCIETYVSSC

Intron Amino Acid Position:

141

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

95.1

1.06

0.7

83.7

29.5

Major BPS

74.2

0.6

69.3

38.4

Major PPT

76.4

0.59

0.9

75.1

34.6

Minor 5ss

-1.8

3.1

44.6

43.4

Minor BPS

63.6

0.42

1.8

76.84

39.9

Associated Gene:

Gene:

ARFGEF3

Ensembl Gene ID:

ENSAPLG00000002724

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002771

56518459 - 56600574

82116