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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_56584833_56599495_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
56584833 - 56599495
Intron Length:
14663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TATTTTACTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATTTTACTT
Flanking Amino Acid:
AAVKIPPYQLREKCLLPLQL
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.9
0.79
0.8
82.7
33.3
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
61.4
0.44
1.6
79.53
37.3

Associated Gene:

Gene:
ARFGEF3
Ensembl Gene ID:
ENSAPLG00000002724
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045378
56518459 - 56599650
81192
ENSAPLT00000028524
56518459 - 56600574
82116
ENSAPLT00000028117
56518459 - 56600574
82116
ENSAPLT00000002771
56518459 - 56600574
82116