About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_56622712_56629670_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56622712 - 56629670
Intron Length:
6959

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCGGG
5'SS Class:
major
3'SS Sequence:
TTTTCTTTACTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTGAC
U12 Branch Point Sequence:
TTTTCTTTACTA
Flanking Amino Acid:
NWSCESLMDYGWGRAAAATY
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
59.8
45.2
Major BPS
53.6
0.09
1.4
48.8
46.3
Major PPT
82.7
0.74
0.8
78.5
34.7
Minor 5ss
35.9
-1.6
3.3
43.6
46
Minor BPS
73.3
0.73
1.5
82.68
32.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030007
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032323
56622501 - 56631470
8970